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WE035
Attributes in entity
1
:
Prey information for each scat
Details
1. DBCODE
Definition:
FSDB Database Code
Domain:
enum
2. ENTITY
Definition:
Entity number
Units:
number
Domain:
range (minimum = 1. maximum = 1.)
3. SCAT_ID
Definition:
Unique sample code representing collection_type, grid_number, scat_number and its location
Domain:
place
4. GRID_NUMBER
Definition:
Sampling grid (3Km x 3Km) cell number
Domain:
place
5. SCAT_NUMBER
Definition:
Scat number within collection type
Units:
number
Domain:
range (minimum = 1. maximum = 927.)
6. COLLECTION_TYPE
Definition:
Defines collection method and time frame
Domain:
enum
7. COLLECTION_DATETIME
Definition:
Date and time scat was collected (time was not recorded for collection_tpe=MT); in Pacific Standard Time (PST)
Units:
date as datetime type
Domain:
range (minimum = Aug 3 2017 12:00AM maximum = Jan 25 2019 12:00AM)
8. LOCUS
Definition:
Region of genome used to barcode potential prey items: COI, 12s, manual, trnL
Domain:
enum
9. PREY_SUPERKINGDOM
Definition:
Superkingdom of prey item detected within the scat
Domain:
taxa
10. PREY_KINGDOM
Definition:
Kingdom of prey item detected within the scat
Domain:
taxa
11. PREY_PHYLUM
Definition:
Phylum of prey item detected within the scat
Domain:
taxa
12. PREY_SUBPHYLUM
Definition:
Subphylum of prey item detected within the scat
Domain:
taxa
13. PREY_CLASS
Definition:
Class of prey item detected within the scat
Domain:
taxa
14. PREY_ORDER
Definition:
Order of prey item detected within the scat
Domain:
taxa
15. PREY_FAMILY
Definition:
Family of prey item detected within the scat
Domain:
taxa
16. PREY_GENUS
Definition:
Genus of prey item detected within the scat
Domain:
taxa
17. PREY_SPECIES
Definition:
Species of prey item detected within the scat
Domain:
taxa
18. CARNIVORE
Definition:
assignment of scat defecator based on DNA metabarcoding
Domain:
taxa
19. SEQ
Definition:
DNA barcode sequence used to identify species.
Domain:
freetext
20. NUMREPS
Definition:
Number of replicates that returned the same sequence (all samples run in triplicate)
Units:
number
Domain:
range (minimum = 2. maximum = 9.)
21. NUMREADS
Definition:
Number of reads of unique sequences in each sample. Mean number of reads calculated for sequences that were in multiple replicates.
Units:
number
Domain:
range (minimum = 7.0 maximum = 455460.3)
22. TOTALREADS
Definition:
Sum of all numreads for a sample
Units:
number
Domain:
range (minimum = 34.7 maximum = 551050.0)
23. RRA
Definition:
Relative read abundance: calculated by dividing the numreads by totalreads per sample
Units:
number
Domain:
range (minimum = 0.0088 maximum = 1.0000)
24. PIDMATCH
Definition:
Percent match of sequence with sequence in the GenBank database
Units:
percent
Domain:
range (minimum = 82.33 maximum = 99.54)
25. QCOVER
Definition:
Query coverage: percentage of the query sequence (your specimen) that overlaps the reference sequence
Units:
percent
Domain:
range (minimum = 18.00 maximum = 100.00)
26. BITSCORE
Definition:
Bit score: measures sequence similarity independent of query sequence length and database size and is normalized based on the rawpairwise alignment score
Units:
number
Domain:
range (minimum = 56.28 maximum = 330.25)