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WE035

Attributes in entity 1: Prey information for each scat

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1. DBCODE
Definition: FSDB Database Code
Domain: enum
2. ENTITY
Definition: Entity number
Units: number
Domain: range (minimum = 1.  maximum = 1.)
3. SCAT_ID
Definition: Unique sample code representing collection_type, grid_number, scat_number and its location
Domain: place
4. GRID_NUMBER
Definition: Sampling grid (3Km x 3Km) cell number
Domain: place
5. SCAT_NUMBER
Definition: Scat number within collection type
Units: number
Domain: range (minimum = 1.  maximum = 927.)
6. COLLECTION_TYPE
Definition: Defines collection method and time frame
Domain: enum
7. COLLECTION_DATETIME
Definition: Date and time scat was collected (time was not recorded for collection_tpe=MT); in Pacific Standard Time (PST)
Units: date as datetime type
Domain: range (minimum = Aug 3 2017 12:00AM  maximum = Jan 25 2019 12:00AM)
8. LOCUS
Definition: Region of genome used to barcode potential prey items: COI, 12s, manual, trnL
Domain: enum
9. PREY_SUPERKINGDOM
Definition: Superkingdom of prey item detected within the scat
Domain: taxa
10. PREY_KINGDOM
Definition: Kingdom of prey item detected within the scat
Domain: taxa
11. PREY_PHYLUM
Definition: Phylum of prey item detected within the scat
Domain: taxa
12. PREY_SUBPHYLUM
Definition: Subphylum of prey item detected within the scat
Domain: taxa
13. PREY_CLASS
Definition: Class of prey item detected within the scat
Domain: taxa
14. PREY_ORDER
Definition: Order of prey item detected within the scat
Domain: taxa
15. PREY_FAMILY
Definition: Family of prey item detected within the scat
Domain: taxa
16. PREY_GENUS
Definition: Genus of prey item detected within the scat
Domain: taxa
17. PREY_SPECIES
Definition: Species of prey item detected within the scat
Domain: taxa
18. CARNIVORE
Definition: assignment of scat defecator based on DNA metabarcoding
Domain: taxa
19. SEQ
Definition: DNA barcode sequence used to identify species.
Domain: freetext
20. NUMREPS
Definition: Number of replicates that returned the same sequence (all samples run in triplicate)
Units: number
Domain: range (minimum = 2.  maximum = 9.)
21. NUMREADS
Definition: Number of reads of unique sequences in each sample. Mean number of reads calculated for sequences that were in multiple replicates.
Units: number
Domain: range (minimum = 7.0  maximum = 455460.3)
22. TOTALREADS
Definition: Sum of all numreads for a sample
Units: number
Domain: range (minimum = 34.7  maximum = 551050.0)
23. RRA
Definition: Relative read abundance: calculated by dividing the numreads by totalreads per sample
Units: number
Domain: range (minimum = 0.0088  maximum = 1.0000)
24. PIDMATCH
Definition: Percent match of sequence with sequence in the GenBank database
Units: percent
Domain: range (minimum = 82.33  maximum = 99.54)
25. QCOVER
Definition: Query coverage: percentage of the query sequence (your specimen) that overlaps the reference sequence
Units: percent
Domain: range (minimum = 18.00  maximum = 100.00)
26. BITSCORE
Definition: Bit score: measures sequence similarity independent of query sequence length and database size and is normalized based on the rawpairwise alignment score
Units: number
Domain: range (minimum = 56.28  maximum = 330.25)